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How to Treat Mustard Algae

Key Takeaways

  • Mustard algae looks like fine sand or dirt at the bottom of your pool — pool cleaners won't fix it, it goes straight through and comes back, so chemical treatment is the only option
  • It's not directly harmful but it burns through chlorine rapidly, creating conditions where bacteria like E. coli can thrive
  • Treatment scales with pool size, not severity — liquid chlorine doses range from 10L (under 20kL pool) up to 30L (100kL pool), followed by algaecide after 7 hours of filtering
  • Keeping the algae in suspension by brushing vigorously is critical — fibreglass and vinyl pools should clear in a week, concrete and pebble pools can take up to three weeks of continuous brushing and high chlorine
  • Prevention is straightforward: test regularly through summer and during heavy use, and shock treat before levels drop — catching it early cuts treatment time significantly

In this article, we show you how to spot and treat mustard algae and other resistant algae strains in your swimming pool.

Thankfully this type of algae does not occur regularly, however, it can be quite stubborn to treat as it is resistant to conventional chlorine treatment.

Pool owners can often mistake mustard algae for dirt, as their pool cleaner fails to collect it. This is because mustard algae cannot be collected by a pool cleaner. It will simply pass through the cleaner and filter and return shortly after. This problem must be treated with chemicals.

Signs of Mustard Algae

Mustard algae presents differently from regular algae problems. Here's what to look for:

🏖️

Looks like fine sand

Yellow or brown deposits settle on the pool floor and walls

👋

Not slimy

Unlike black spot, mustard algae has a dry, dusty texture to the touch

🔄

Brushes off easily — and comes back

It disappears with a brush but regrows quickly without chemical treatment

Spreads fast

Appears quickly on walls, steps, pool toys, cleaners and other equipment

🌫️

Clouds the water

Causes cloudy water and can leave staining on pool surfaces and liners

Is Mustard Algae Harmful to Humans?

Mustard algae itself does not pose a direct risk to humans, however it devours chlorine, making it difficult to maintain healthy sanitation levels in your pool water. This increases the risk of harmful bacteria growth. Bacteria such as E. coli can thrive in an environment overrun with mustard algae.

How to Get Rid of Mustard Algae

Start treatment as soon as you notice fine sand or dirt appearing on the pool floor or other surfaces early treatment will have a faster outcome. The following treatment is broad-spectrum and recommended for all mutant algal strains.

1

Vacuum to waste

Vacuum your pool to waste to remove as much algae as possible before treatment begins.

2

Clean your filter

Backwash or hose cartridges thoroughly. Algae will thrive inside your filter and reinfect the pool if this step is skipped.

3

Adjust pH to 7.2-7.6

If adjustment is needed, filter for 4 hours before moving to the next step.

4

Add a clarifier cube

Drop 1 clarifier cube into the skimmer box.

5

Add liquid chlorine

Up to 20kL

10L

20kL – 55kL

15L

55kL – 70kL

20L

70kL – 100kL

30L

6

Brush vigorously

Brush all pool walls thoroughly. Keeping the algae in suspension is the most effective way to eliminate it don't skip this step.

7

Filter for 7 hours, then add algaecide

Up to 20kL

1 x Algae Killer

20kL – 70kL

1 x Hotzone

70kL – 110kL

2 x Hotzone

8

Run filter 24/7 until clear

Keep the filter running continuously until water clarity returns typically 2-4 days. Backwash and brush once daily throughout.

9

Rebalance your water

Test regularly and rebalance as needed until levels are stable.

Fibreglass & Vinyl

~1 week

with correct treatment

Concrete & Pebble

Up to 3 weeks

continuous brushing required

Prevention

Treating stubborn algae is time-consuming and costly, so prevention is always preferable. Test your pool regularly particularly in summer and during periods of heavy use as this is when chlorine levels are most likely to drop.

Test regularly through summer

Particularly during periods of heavy use when chlorine burns off fastest.

Top up chlorine before levels drop

Don't wait until you have a problem apply a shock treatment proactively during hot weather or high bather load.

Catch it early

Treatment started at first signs of mustard algae is significantly faster and cheaper than treating a full outbreak.

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